tag:blogger.com,1999:blog-8499895524521663926.post3053934389144305207..comments2024-03-27T07:13:39.236-04:00Comments on Phylogenetic Tools for Comparative Biology: Splitting a tree over mutiple plotting devices or pagesLiam Revellhttp://www.blogger.com/profile/04314686830842384151noreply@blogger.comBlogger3125tag:blogger.com,1999:blog-8499895524521663926.post-50447684388525166312020-09-17T00:15:39.575-04:002020-09-17T00:15:39.575-04:00Thanks this post! Is there a way to use this in co...Thanks this post! Is there a way to use this in conjunction with the plotTree.barplot function?Shannonhttps://www.blogger.com/profile/04394581382846204072noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-62521971362065588762020-06-30T06:45:18.082-04:002020-06-30T06:45:18.082-04:00Hi Liam, I've got a similar problem. I would l...Hi Liam, I've got a similar problem. I would like to use the splitplotTree to cut a huge tree into smaller sections in order to properly visualize the results of an ancestral state reconstruction. <br /><br />I am using this code for the normal tree:<br /><br />plot(tree, show.node.label=FALSE, show.tip.label = FALSE, label.offset=3,cex=0.4)<br /><br />tiplabels(pie = Trait_matrix[tree$tip.label, ], piecol = c("red","green"), cex = 0.50)<br /><br />nodelabels(pie=Trait_ARD_model$lik.anc, piecol=c("red","green"), cex = 0.50)<br /><br />Can I (and if so how) combine this with the splitplotTree function?C. Broeckhovenhttps://www.blogger.com/profile/12308876076549183589noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-12764360458126282222018-08-14T14:18:47.846-04:002018-08-14T14:18:47.846-04:00Hi Liam,
This post is really helpful. I have a sl...Hi Liam,<br /><br />This post is really helpful. I have a slight problem with my tree though. I used make.simmap to make an ancrestal reconstruction tree for discrete characters. The color coding is red for absent and blue for present. When I am using the above wrapper, the colors are not appearing on the final split tree. I tried changing the wrapper to include "cols", but in vain. Could you please help me with this?Anonymoushttps://www.blogger.com/profile/15673669953621151690noreply@blogger.com