tag:blogger.com,1999:blog-8499895524521663926.post4938570935200287513..comments2024-03-27T07:13:39.236-04:00Comments on Phylogenetic Tools for Comparative Biology: More on labeling nodes using ape::nodelabels & phytoolsLiam Revellhttp://www.blogger.com/profile/04314686830842384151noreply@blogger.comBlogger6125tag:blogger.com,1999:blog-8499895524521663926.post-6606606547447395892020-08-03T15:50:26.036-04:002020-08-03T15:50:26.036-04:00Thanks Liam!!Thanks Liam!!nenhumhttps://www.blogger.com/profile/12381677434988363133noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-51851577011509650682020-08-01T11:21:57.671-04:002020-08-01T11:21:57.671-04:00Hi Felipe. Try using the argument node in ape::nod...Hi Felipe. Try using the argument node in ape::nodelabels to indicate the nodes you want to label - but then leave out the root! The root node is always Ntip(tree)+1.<br />- LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-47183433402188437982020-08-01T09:37:25.673-04:002020-08-01T09:37:25.673-04:00Dear Liam, I have been using for some thing these ...Dear Liam, I have been using for some thing these amazing suit of functions, thank you! I have a question, if its possible. Everytime I root the tree like midpoint, and plot the node.labels to show the support, is also ploting the "Root" word. Any tip of how to avoid this ploting? Thanks!<br />- Felipenenhumhttps://www.blogger.com/profile/12381677434988363133noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-44009206212941697142018-10-19T17:19:22.671-04:002018-10-19T17:19:22.671-04:00How can I retrieve node numbers corresponding to l...How can I retrieve node numbers corresponding to labels stored in tree$node.label? I have all my nodes labeled in the tree object, but I want to label only some of them as defined in a vector. e.g. tree with 3 nodes labeled A, B, C - I want to label only A and C. I know that you can first display node numbers and then manually insert them to the nodelabels(), but I have hundreds of complicated trees in which I want to label corresponding nodes with same labels. ThanksAnonymoushttps://www.blogger.com/profile/08290064634751071037noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-78099520530722816522018-05-19T13:47:00.988-04:002018-05-19T13:47:00.988-04:00Sure. In that case the argument text is a vector o...Sure. In that case the argument text is a vector of the text strings you want to plot, while node gives a vector of the corresponding node numbers.Liam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-6999697794498344302018-05-18T19:36:07.505-04:002018-05-18T19:36:07.505-04:00Is it possible to replace the nodelabel numbers wi...Is it possible to replace the nodelabel numbers with names? for example, to name genera and families?jonhttps://www.blogger.com/profile/12846036008323334814noreply@blogger.com