tag:blogger.com,1999:blog-8499895524521663926.post5739849753161403100..comments2024-03-27T07:13:39.236-04:00Comments on Phylogenetic Tools for Comparative Biology: Rphylip in Mac OS XLiam Revellhttp://www.blogger.com/profile/04314686830842384151noreply@blogger.comBlogger6125tag:blogger.com,1999:blog-8499895524521663926.post-89693780112681440222013-12-17T12:43:42.765-05:002013-12-17T12:43:42.765-05:00Glad to hear it! Thanks for letting me know. LiamGlad to hear it! Thanks for letting me know. LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-75858345241042332632013-12-17T12:28:29.747-05:002013-12-17T12:28:29.747-05:00The newest version of Rphylip works with the curre...The newest version of Rphylip works with the current version of phylip installed through homebrew! Thanks, Liam!Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-34219680350325885342013-12-17T12:24:39.012-05:002013-12-17T12:24:39.012-05:00the correct path is /usr/local/Cellar/phylip/3.695...the correct path is /usr/local/Cellar/phylip/3.695/bin for homebrewAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-3324197534735156662013-12-16T22:29:42.242-05:002013-12-16T22:29:42.242-05:00OK - I added this path to findPath; however I did ...OK - I added this path to findPath; however I did not change setupOSX as I don't know if the 'special instructions' are required for packages managed with Homebrew. Please let me know if this would be helpful.<br />All the best, LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-88074890127216374052013-12-16T21:51:25.321-05:002013-12-16T21:51:25.321-05:00Hi. I'm adding this now.
Can you verify that...Hi. I'm adding this now. <br /><br />Can you verify that the path is /usr/local/Cellar/phylip/3.695/bin and not /usr/local/Cellar/phylip-3.695/bin (or, for that matter, /usr/local/Cellar/phylip-3.695/exe)? I don't have a Mac (or Homebrew), but on my lab Mac PHYLIP is in /Applications/phylip-3.695/exe. Thanks!<br /><br />All the best, LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-87663740991262448232013-12-16T06:01:34.361-05:002013-12-16T06:01:34.361-05:00Hi Liam,
This is a very cool project you're b...Hi Liam,<br /><br />This is a very cool project you're building. A very common package manager being used by a lot of mac users is called Homebrew, which can also be used for installation of phylip (there is a "tap" of Homebrew called homebrew/science). Homebrew installs packages in it's own directory, by default "/usr/local/Cellar", and in the case of phylip, the full path is "/usr/local/Cellar/phylip/3.695/bin". Not sure if it's a worthwhile modification to the findPath function but Homebrew makes maintenance of a lot of packages quite easy.Anonymousnoreply@blogger.com