tag:blogger.com,1999:blog-8499895524521663926.post5944456411333981023..comments2024-03-27T07:13:39.236-04:00Comments on Phylogenetic Tools for Comparative Biology: New method for "co-phylogenetic" plottingLiam Revellhttp://www.blogger.com/profile/04314686830842384151noreply@blogger.comBlogger6125tag:blogger.com,1999:blog-8499895524521663926.post-42623247536698404682019-03-25T08:57:52.407-04:002019-03-25T08:57:52.407-04:00Hi Liam, thank you so much for this blog.
I am us...Hi Liam, thank you so much for this blog. <br />I am using cophylo() function and I wondered which would be the easiest way to obtain the statistical significance of the comparison, like a permutation test or something like that.Zurdohttps://www.blogger.com/profile/01322851684290970741noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-24490227088612466042015-09-04T12:27:23.603-04:002015-09-04T12:27:23.603-04:00Hi. Can you email me (liam.revell@umb.edu) the exa...Hi. Can you email me (liam.revell@umb.edu) the example? Otherwise it will be hard for me to investigate this issue. - LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-89305346602711734672015-09-04T06:31:01.508-04:002015-09-04T06:31:01.508-04:00PS:
Trees with different numbers of tips and parti...PS:<br />Trees with different numbers of tips and partial matching to each other. In addition, smaller tree match to multiple tips in the bigger tree. <br />the number of column of matrix( in the 'assoc=matrix') is equal to the number of tips on the smaller tree. kkhttps://www.blogger.com/profile/06742877783219803266noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-91384971770083075622015-09-04T06:09:40.024-04:002015-09-04T06:09:40.024-04:00Hi Liam, i like this function very much and thanks...Hi Liam, i like this function very much and thanks for your hard work. I want to compare two tree with different tips, it is not problem by using the command <br /><br />cophyloplot(tr1,tr2,assoc=matrix)<br /><br />however, 'phylo' come up the following error:<br /><br />obj<-cophylo(tr1,tr2,assoc=matrix)<br />Rotating nodes to optimize matching...<br />Error in if (oo > pp) tree <- tt : missing value where TRUE/FALSE neededkkhttps://www.blogger.com/profile/06742877783219803266noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-36535485944197935422015-09-04T06:04:12.405-04:002015-09-04T06:04:12.405-04:00This comment has been removed by the author.kkhttps://www.blogger.com/profile/06742877783219803266noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-72443362927384985072015-07-13T22:09:54.291-04:002015-07-13T22:09:54.291-04:00Here is a much more flexible and versatile version...<a href="http://blog.phytools.org/2015/07/more-on-new-method-for-co-phylogenetic.html" rel="nofollow">Here</a> is a much more flexible and versatile version that I just posted.Liam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.com