tag:blogger.com,1999:blog-8499895524521663926.post8823870976774159551..comments2024-03-27T07:13:39.236-04:00Comments on Phylogenetic Tools for Comparative Biology: Ancestral character estimation under the threshold model, part IILiam Revellhttp://www.blogger.com/profile/04314686830842384151noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-8499895524521663926.post-70204537318309408152012-10-25T11:26:25.846-04:002012-10-25T11:26:25.846-04:00Hi Ricardo.
This cannot be done with threshBayes,...Hi Ricardo.<br /><br />This cannot be done with threshBayes, which is specifically for a two character, correlated evolution model. The method described in this post is actually implemented in a different function, ancThresh, which I have just <a href="http://phytools.blogspot.com/2012/10/version-of-ancthresh-posted.html" rel="nofollow">posted</a>; but this code is "bleeding edge" and should be used only with caution.<br /><br />- LiamLiam Revellhttps://www.blogger.com/profile/04314686830842384151noreply@blogger.comtag:blogger.com,1999:blog-8499895524521663926.post-65406146974385482462012-10-25T07:14:26.951-04:002012-10-25T07:14:26.951-04:00Dear Liam,
Is there a way to run threshBayes with...Dear Liam,<br /><br />Is there a way to run threshBayes with a single discrete character?<br /><br />Also, I am relatively new to R so when I run threshBayes with two characters I do not know how to plot the results onto the phylogeny as you did above.<br /><br />I would be very greatful for any tips!<br /><br />RicardoConostegiahttps://www.blogger.com/profile/00182499478812939067noreply@blogger.com