Recently I received the following question:
“I am using the add.color.bar function to add a colorbar to an existing plot.
Do you know if it is possible to move the added colorbar to the outside of the
plot domain? Do you think I would need to modify code in the actual
function?”
Evidently, this can be done using par(xpd=TRUE)
. For instance:
library(phytools)
tree
##
## Phylogenetic tree with 26 tips and 25 internal nodes.
##
## Tip labels:
## A, B, C, D, E, F, ...
##
## Rooted; includes branch lengths.
x
## A B C D E F
## 3.09148522 1.54096027 2.91508379 2.00469068 1.15813551 0.29543463
## G H I J K L
## 0.27951056 0.60805259 -2.52405841 -3.50891295 -3.34674083 -0.97428407
## M N O P Q R
## -1.25336677 -1.40812351 -0.51371266 -2.92582374 -2.24608676 -0.53203275
## S T U V W X
## -0.59487179 0.30811419 -0.08364322 0.16895725 0.70189973 -3.64724619
## Y Z
## -3.65517946 -4.30271550
obj<-contMap(tree,x,plot=FALSE)
plot(obj,legend=FALSE,mar=c(5.1,2.1,2.1,2.1))
par(xpd=TRUE)
add.color.bar(leg=3,cols=obj$cols,title="trait value",lims=obj$lims,
digits=3,prompt=FALSE,x=0,y=-3)
We can easily see that this is outside of our plotting domain by adding axis labels to the plot as follows:
plot(obj,legend=FALSE,mar=c(6.1,2.1,2.1,2.1))
par(xpd=TRUE)
add.color.bar(leg=3,cols=obj$cols,title="trait value",lims=obj$lims,
digits=3,prompt=FALSE,x=0,y=-4)
axis(1)
You get the general idea.
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