Friday, November 2, 2012

New minor version of phytools v0.2-03

I just posted a new minor version of 'phytools' (v0.2-03). This package version has the new function densityMap, for visualizing the posterior density from the stochastic mapping of a binary character on the trees; multi.mantel for partial Mantel tests; and the new major function for ancestral character estimation under the threshold model, ancThresh (1, 2, 3, 4). The function densityMap can also now be called from with fancyTree; and I fixed a couple of bugs in densityMap from the first version - particularly pertaining to the plotted legend, which wasn't showing up correctly. Finally, the package also includes a number of significant updates to other functions as well. Please check it out.

To install, just do the usual - first download the package source here, and then type:
install.packages("phytools_0.2-03.tar.gz",type="source", repos=NULL)
Good luck!

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