I just posted a new minor version of 'phytools' (v0.2-03). This package version has the new function densityMap
, for visualizing the posterior density from the stochastic mapping of a binary character on the trees; multi.mantel
for partial Mantel tests; and the new major function for ancestral character estimation under the threshold model, ancThresh
). The function densityMap
can also now be called from with fancyTree
; and I fixed a couple of bugs in densityMap
from the first version - particularly pertaining to the plotted legend, which wasn't showing up correctly. Finally, the package also includes a number of significant updates to other functions as well. Please check it out.
To install, just do the usual - first download the package source here
, and then type:
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