Tuesday, August 26, 2014

New version of phytools submitted to CRAN

I just submitted a new version of phytools (phytools 0.4-31) to CRAN. Hopefully it will be accepted and post within 24 hrs.

Some updates in this version include the following:

1. An important bug fix in the phytools function make.simmap for multi-state data.

2. A new version of the phytools 'robust' tree reader, read.newick, that permits a root edge length.

3. New user controls for the function phylo.to.map for projecting a phylogeny onto a geographic map (described here).

4. An update to the phytools function locate.yeti permitting the unknown leaf to attach below the root node of the base tree.

5. A bug fix for the S3 plotting method for objects of class "describe.simmap" (described here).

6. A bug fix for the phytools wrapper function plotBranchbyTrait that corrects the orientation of labels on fan trees, among other things.

7. A new version of threshBayes with an option to suppress printing the MCMC status to screen (which can be annoying for very long chains).

8. A bug fix in read.simmap to address a problem in which trees could not be read from a text string (only from file).

Finally, 9. drop.tip 'methods' for objects of class "contMap" and "densityMap". This also permits the user to supply internal node values to contMap.

I have posted a source build to the phytools page. Hopefully it is also on CRAN soon.

That's it for now.

1 comment:

  1. Jeg bestilte en kopi af Balenciaga sko her.billige Balenciaga sko Da jeg modtog skoene, overraskede det mig meget. Skoene er perfekte, og kvaliteten er nøjagtig den samme. Et blændende murværk.billige Balenciaga sandaler damer Jeg introducerede denne hjemmeside til mine venner, og mine venner kunne lide det meget.